STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_03431Exonuclease V subunit alpha. (920 aa)    
Predicted Functional Partners:
BV96_03432
Type IV secretory protein VirD4.
 
     0.946
BV96_01753
DNA helicase UvrD; Belongs to the helicase family. UvrD subfamily.
  
 
 0.747
traD
Conjugal DNA metabolism.
 
     0.724
BV96_03513
Conjugal transfer protein TraN.
  
    0.700
BV96_03514
Type-F conjugative transfer system pilin assembly protein TrbC.
 
     0.692
trbC_3
Sex pilus assembly and mating pair formation protein.
 
     0.692
traN_3
Mating pair stabilization protein.
  
    0.689
traW_1
Conjugal transfer protein TraW.
  
     0.684
BV96_02258
Xre-family transcriptional regulator.
  
     0.670
BV96_03489
Type IV secretory protein VirD4.
 
     0.666
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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