STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ahpG3Putative cytochrome P450 alkane hydroxylase CYP153A11. (256 aa)    
Predicted Functional Partners:
polA
DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.662
BV96_03418
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
    0.603
BV96_00036
Putative flavin-containing monooxygenase.
  
   0.570
BV96_02785
Putative flavin-containing monooxygenase.
  
   0.549
BV96_00482
FAD dependent oxidoreductase.
  
   0.545
BV96_00078
Putative flavin-containing monooxygenase.
  
   0.542
BV96_00197
FAD-dependent oxidoreductase.
  
   0.542
BV96_00344
Putative flavin-containing monooxygenase.
  
   0.536
kdx
[2Fe-2S]ferredoxin.
 
  0.534
BV96_01586
Putative NUDIX hydrolase.
  
  
  0.525
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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