STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylLPutative cis-(Methyl)benzoate dihydrodiol dehydrogenase. (263 aa)    
Predicted Functional Partners:
xylY
Putative toluene/benzoate dioxygenase small subunit.
 
 
  0.852
xylX
Putative toluene/benzoate dioxygenase large subunit.
 
     0.742
BV96_02128
Short-chain dehydrogenase/reductase.
  
     0.731
BV96_02930
Short-chain dehydrogenase/reductase.
  
 
   0.720
ahdA1e
Large subunit of oxygenase.
 
     0.690
BV96_02944
Short-chain dehydrogenase/reductase.
  
     0.670
BV96_00625
3-oxoacyl-[acyl-carrier protein] reductase.
  
     0.660
BV96_02130
Putative oxidoreductase.
  
 
   0.651
BV96_02113
2,4-dienoyl-CoA reductase (NADPH).
  
     0.575
BV96_02756
Oxidoreductase.
  
 
   0.544
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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