Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xylYPutative toluene/benzoate dioxygenase small subunit. (164 aa)    
Predicted Functional Partners:
xylX
Putative toluene/benzoate dioxygenase large subunit.
 
 
 0.988
bphA1d
Biphenyl dioxygenase large subunit.
 
 
 0.978
bphA1c
Biphenyl dioxygenase large subunit.
 
 
 0.956
phnA
PhnA.
 
 
 0.946
BV96_04311
Hypothetical protein.
 
 
 0.944
xylL
Putative cis-(Methyl)benzoate dihydrodiol dehydrogenase.
 
 
  0.852
ahdA1e
Large subunit of oxygenase.
 
   0.847
bphA2d
Aromatic oxygenase small subunit.
 
     0.731
BV96_00009
2Fe-2S ferredoxin.
 
   0.721
bphC
Biphenyl-2,3-diol 1,2-dioxygenase; Belongs to the extradiol ring-cleavage dioxygenase family.
 
     0.709
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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