STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylXPutative toluene/benzoate dioxygenase large subunit. (470 aa)    
Predicted Functional Partners:
xylY
Putative toluene/benzoate dioxygenase small subunit.
 
 
 0.988
phnA2a
Ring hydroxylating dioxygenase beta subunit.
 
 
 0.941
bphA2d
Aromatic oxygenase small subunit.
 
 
 0.934
ahdA2c
Putative small subunit of oxygenase.
 
 
 0.900
xylL
Putative cis-(Methyl)benzoate dihydrodiol dehydrogenase.
 
     0.742
bphA1d
Biphenyl dioxygenase large subunit.
 
    
0.730
bphC
Biphenyl-2,3-diol 1,2-dioxygenase; Belongs to the extradiol ring-cleavage dioxygenase family.
 
     0.704
pdxA_2
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.636
ahdA2e
Small subunit of oxygenase.
  
   0.599
bphA3
Rieske (2Fe-2S) domain-containing protein.
 
   
 0.572
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.