Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_04007IncF plasmid conjugative transfer pilus assembly protein TraC. (873 aa)    
Predicted Functional Partners:
traW_3
Sex pilus assembly and synthesis protein.
 
     0.949
BV96_04010
Conjugal transfer protein; Overlaps another CDS with the same product name.
 
     0.947
traU
Conjugal DNA transfer protein TraU.
 
     0.947
traB_2
Sex pilus assembly and synthesis protein.
 
     0.941
dsbC
Disulfide bond isomerase protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.934
BV96_04455
Type VI secretion protein.
  
 
 0.891
BV96_04450
Conjugal transfer protein TraJ.
  
 
 0.882
virB6
VirB6 type IV secretion protein.
  
 
 0.878
BV96_04448
VirB10 type IV secretion protein.
 
 
 0.839
BV96_04144
Conjugation TrbI-like protein.
  
 
 0.802
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.