STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BV96_04131Lytic transglycosylase, catalytic precursor. (262 aa)    
Predicted Functional Partners:
BV96_04128
Glycosidase.
 
     0.909
BV96_04129
TraF peptidase, Serine peptidase, MEROPS family S26C precursor.
 
     0.889
BV96_04130
Hypothetical protein.
 
     0.848
BV96_04126
Transcriptional regulator.
 
     0.732
BV96_04132
Type IV secretory pathway, VirD2 components (Relaxase).
 
     0.679
BV96_04134
CopG domain-containing protein.
 
     0.614
BV96_01690
Lytic transglycosylase.
  
   
 0.563
BV96_04122
Hypothetical protein.
  
     0.528
BV96_04127
Putative replication protein A.
 
     0.520
BV96_04133
TRAG protein precursor.
 
     0.502
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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