Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BV96_04136Type II secretion system protein E precursor. (328 aa)    
Predicted Functional Partners:
BV96_04137
Conjugal transfer protein.
 
   
 0.958
BV96_04138
Putative conjugal transfer protein.
 
   
 0.957
BV96_04139
Conjugative transfer protein TrbE.
 
   
 0.945
BV96_04140
Conjugal transfer protein trbJ precursor.
 
   
 0.932
BV96_00408
Type II secretion system F domain protein precursor.
 
  
 0.907
BV96_01272
Tight adherence protein B.
 
  
 0.902
BV96_04143
Conjugal transfer protein TrbG/VirB9/CagX precursor.
 
   
 0.844
BV96_01271
Type II secretion system protein.
 
  
 0.838
BV96_04144
Conjugation TrbI-like protein.
 
   
 0.833
BV96_04142
Conjugal transfer protein precursor.
 
   
 0.829
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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