close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_04142Conjugal transfer protein precursor. (227 aa)    
Predicted Functional Partners:
BV96_04143
Conjugal transfer protein TrbG/VirB9/CagX precursor.
 
  
 0.980
BV96_04144
Conjugation TrbI-like protein.
 
  
 0.978
BV96_04141
TrbL/VirB6 plasmid conjugal transfer protein.
 
  
 0.975
BV96_04137
Conjugal transfer protein.
 
  
 0.964
BV96_04138
Putative conjugal transfer protein.
 
  
 0.964
BV96_04136
Type II secretion system protein E precursor.
 
  
 0.948
BV96_04145
Hypothetical protein; Uncharacterized conserved small-like protein.
 
     0.948
BV96_04140
Conjugal transfer protein trbJ precursor.
 
  
 0.945
BV96_04139
Conjugative transfer protein TrbE.
 
  
 0.939
BV96_04507
Conjugal transfer protein TrbG/VirB9/CagX.
 
  
 0.917
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.