Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BV96_04337Gentisate 1 2-dioxygenase-like protein. (365 aa)    
Predicted Functional Partners:
BV96_04338
Putative 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
       0.773
traG_1
Conjugal transfer protein TraG.
  
     0.764
traG_2
DNA transfer and F pilus assembly protein TraG.
  
     0.762
BV96_03860
Methionine aminopeptidase.
  
     0.760
BV96_04336
Ornithine cyclodeaminase.
 
     0.736
BV96_03234
PRTRC system protein B.
  
     0.733
BV96_03260
Hypothetical protein.
  
     0.731
BV96_03834
Putative sulfurtransferase DndC.
  
     0.728
BV96_03829
PRTRC system protein B.
  
     0.726
BV96_04324
TetR family transcriptional regulator.
  
     0.726
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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