Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BV96_04450Conjugal transfer protein TraJ. (230 aa)    
Predicted Functional Partners:
BV96_04448
VirB10 type IV secretion protein.
 
 
 0.996
virB6
VirB6 type IV secretion protein.
 
 
 0.995
BV96_04449
P-type conjugative transfer protein VirB9.
 
  
 0.992
BV96_04447
Type IV secretion protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
  
 0.987
BV96_04455
Type VI secretion protein.
  
 
 0.986
BV96_04454
Transporter.
 
 
 0.981
BV96_04446
Conjugal transfer protein TraG.
 
   
 0.943
BV96_04144
Conjugation TrbI-like protein.
  
 
 0.937
BV96_04506
Conjugal transfer protein TrbI.
  
 
 0.937
BV96_02578
Type-IV secretion system protein TraC.
 
 
 0.896
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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