Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BV96_04458Conjugal transfer protein TraG. (539 aa)    
Predicted Functional Partners:
BV96_04448
VirB10 type IV secretion protein.
 
 
 
 0.803
BV96_04449
P-type conjugative transfer protein VirB9.
 
   
 0.732
BV96_04454
Transporter.
 
    0.710
BV96_04144
Conjugation TrbI-like protein.
 
 
 
 0.641
BV96_04512
CagE, TrbE, VirB component of type IV transporter system.
 
    0.632
BV96_04494
Hypothetical protein; N-terminus replication primase.
  
     0.627
BV96_03638
Hypothetical protein; Similar to N-terminus replication primases.
  
     0.625
BV96_04506
Conjugal transfer protein TrbI.
 
 
 
 0.615
BV96_04457
Putative Tn3 family transposase.
       0.613
BV96_04381
Antirestriction protein ArdC.
  
     0.609
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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