Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BV96_04460Plasmid replication initiator RepA. (370 aa)    
Predicted Functional Partners:
BV96_00003
Chromosome partitioning protein ParB; Belongs to the ParB family.
 
     0.625
BV96_00002
Cobyrinic acid a,c-diamide synthase.
 
     0.524
BV96_04441
Relaxase.
 
     0.523
BV96_04653
Plasmid replication protein RepA.
 
     0.506
BV96_03268
Probably methylase/helicase.
  
     0.490
BV96_04579
Putative methylase/helicase.
  
     0.483
BV96_03628
Putative methylase/helicase.
  
     0.467
BV96_04577
Replication protein A.
 
     0.463
BV96_03623
Putative methylase/helicase.
  
     0.459
BV96_00415
Chromosome partitioning protein ParB; Belongs to the ParB family.
 
     0.436
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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