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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BV96_04643Peptidase propeptide domain-containing protein precursor. (113 aa)    
Predicted Functional Partners:
BV96_00697
Flagellar motor switch protein FliM.
    
   0.688
BV96_00720
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.688
flgI
Basal body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
    
   0.688
BV96_00727
Flagellar hook protein; Belongs to the flagella basal body rod proteins family.
    
   0.688
BV96_03307
Thioredoxin-like protein.
  
     0.564
BV96_00795
DNA-binding protein.
   
    0.557
BV96_02652
Magnesium and cobalt transporter.
   
    0.557
BV96_02567
Thioredoxin.
  
     0.544
BV96_04644
Putative two-component histidine kinase.
  
  
 0.538
traW_1
Conjugal transfer protein TraW.
  
     0.532
Your Current Organism:
Sphingomonas paucimobilis
NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis
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