BV96_04729 protein (Sphingomonas paucimobilis)

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Score

BV96_04729

Hypothetical protein. (216 aa)

Predicted Functional Partners:

secY

0.986

BV96_01591

0.984

secE

0.984

secB

0.958

BV96_02107

0.924

BV96_03182

0.924

BV96_01357

0.893

rplW

0.892

rpmC

0.891

polA

0.834

Your Current Organism:

Sphingomonas paucimobilis

NCBI taxonomy Id: 13689
Other names: ATCC 10829 [[Flavobacterium devorans]], ATCC 29837, Bacillus devorans, CCUG 31192, CCUG 6518, CIP 100752, Chromobacterium devorans, DSM 30198 [[Flavobacterium devorans]], Flavobacterium devorans, GIFU 2395, GIFU:2395, IFO 13935, JCM 7516, LMG 4017 [[Flavobacterium devorans]], LMG:4017 [[Flavobacterium devorans]], NBRC 13935, NCAIM B.01654, NCPPB 3838, NCTC 11030, NRRL B-54 [[Flavobacterium devorans]], Pseudomonas paucimobilis, S. paucimobilis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BV96_01357	BV96_04729	BV96_01357	BV96_04729	Transcriptional regulator, XRE family.	Hypothetical protein.	0.893
BV96_01357	rplW	BV96_01357	BV96_01042	Transcriptional regulator, XRE family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.934
BV96_01357	rpmC	BV96_01357	BV96_01036	Transcriptional regulator, XRE family.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.934
BV96_01591	BV96_04729	BV96_01591	BV96_04729	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Hypothetical protein.	0.984
BV96_01591	polA	BV96_01591	BV96_02524	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.518
BV96_01591	rplW	BV96_01591	BV96_01042	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.895
BV96_01591	rpmC	BV96_01591	BV96_01036	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.893
BV96_01591	secB	BV96_01591	BV96_00854	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.	0.920
BV96_01591	secE	BV96_01591	BV96_03760	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.	0.999
BV96_01591	secY	BV96_01591	BV96_01024	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.	Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.	0.998
BV96_02107	BV96_03182	BV96_02107	BV96_03182	OmpA-family protein.	Outer membrane protein A.	0.973
BV96_02107	BV96_04729	BV96_02107	BV96_04729	OmpA-family protein.	Hypothetical protein.	0.924
BV96_02107	rplW	BV96_02107	BV96_01042	OmpA-family protein.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.943
BV96_02107	rpmC	BV96_02107	BV96_01036	OmpA-family protein.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.933
BV96_02107	secY	BV96_02107	BV96_01024	OmpA-family protein.	Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.	0.592
BV96_03182	BV96_02107	BV96_03182	BV96_02107	Outer membrane protein A.	OmpA-family protein.	0.973
BV96_03182	BV96_04729	BV96_03182	BV96_04729	Outer membrane protein A.	Hypothetical protein.	0.924
BV96_03182	rplW	BV96_03182	BV96_01042	Outer membrane protein A.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.943
BV96_03182	rpmC	BV96_03182	BV96_01036	Outer membrane protein A.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.933
BV96_03182	secY	BV96_03182	BV96_01024	Outer membrane protein A.	Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.	0.592

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