STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAH35238.1FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
OAH45994.1
D-amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.905
OAH35239.1
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.862
OAH44417.1
NAD(FAD)-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.844
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.837
OAH35193.1
Aminomethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.835
OAH35237.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.772
OAH35240.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.750
OAH35244.1
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.728
CpaB
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.693
OAH35242.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
       0.693
Your Current Organism:
Sphingobium yanoikuyae
NCBI taxonomy Id: 13690
Other names: ATCC 51230, Beijerinckia sp. B1, CCUG 28380, CCUG 31205, CIP 106726, DSM 7462, GIFU 9882, GIFU:9882, IFO 15102, JCM 7371, LMG 11252, LMG:11252, NBRC 15102, S. yanoikuyae, Sphingobium sp. TJ, Sphingomonas yanoikuyae
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