STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAH45825.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)    
Predicted Functional Partners:
OAH45824.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.837
pedF
Cytochrome c-550 PedF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.790
OAH46640.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.790
OAH45823.1
RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.783
OAH43886.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.664
OAH40771.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.664
OAH45950.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.578
OAH43400.1
Phosphatidylglycerophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.563
PeaA
Quinohemoprotein amine dehydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.549
OAH46562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.513
Your Current Organism:
Sphingobium yanoikuyae
NCBI taxonomy Id: 13690
Other names: ATCC 51230, Beijerinckia sp. B1, CCUG 28380, CCUG 31205, CIP 106726, DSM 7462, GIFU 9882, GIFU:9882, IFO 15102, JCM 7371, LMG 11252, LMG:11252, NBRC 15102, S. yanoikuyae, Sphingobium sp. TJ, Sphingomonas yanoikuyae
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