Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OAH43189.1Conjugal transfer protein TraA; MobA/MobL family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (955 aa)    
Predicted Functional Partners:
OAH43319.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
OAH38607.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
OAH43195.1
AlpA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.762
AddA
DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
  
 
 0.757
OAH38612.1
Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.526
OAH43214.1
Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
OAH43190.1
Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.493
OAH41260.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.465
OAH45310.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
OAH40921.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Sphingobium yanoikuyae
NCBI taxonomy Id: 13690
Other names: ATCC 51230, Beijerinckia sp. B1, CCUG 28380, CCUG 31205, CIP 106726, DSM 7462, GIFU 9882, GIFU:9882, IFO 15102, JCM 7371, LMG 11252, LMG:11252, NBRC 15102, S. yanoikuyae, Sphingobium sp. TJ, Sphingomonas yanoikuyae
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