STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAH42126.1Type IV secretion system protein VirB5; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
OAH42125.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.778
OAH42127.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.772
OAH42128.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.770
OAH42124.1
Type IV secretion system protein VirB6; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.745
OAH42119.1
Type IV secretion system protein VirB11; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.655
OAH42122.1
Conjugal transfer protein TraJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.655
OAH42121.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.652
OAH42120.1
Type IV secretion system protein VirB10; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.649
OAH42118.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.646
OAH42129.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.635
Your Current Organism:
Sphingobium yanoikuyae
NCBI taxonomy Id: 13690
Other names: ATCC 51230, Beijerinckia sp. B1, CCUG 28380, CCUG 31205, CIP 106726, DSM 7462, GIFU 9882, GIFU:9882, IFO 15102, JCM 7371, LMG 11252, LMG:11252, NBRC 15102, S. yanoikuyae, Sphingobium sp. TJ, Sphingomonas yanoikuyae
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