Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AX777_24895Transposase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
AX777_25885
Plasmid stabilization protein; Internal stop; incomplete; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.908
AX777_16425
ATPase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.815
OAH47769.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.813
OAH44697.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.799
OAH36061.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.793
OAH45363.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.773
OAH40205.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.765
OAH41350.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.751
OAH47855.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.477
OAH42028.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.470
Your Current Organism:
Sphingobium yanoikuyae
NCBI taxonomy Id: 13690
Other names: ATCC 51230, Beijerinckia sp. B1, CCUG 28380, CCUG 31205, CIP 106726, DSM 7462, GIFU 9882, GIFU:9882, IFO 15102, JCM 7371, LMG 11252, LMG:11252, NBRC 15102, S. yanoikuyae, Sphingobium sp. TJ, Sphingomonas yanoikuyae
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