A0A1X2GZP3 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2GZP3

Kinase-like domain-containing protein. (861 aa)

Predicted Functional Partners:

A0A1X2H4Z7

0.922

A0A1X2HIT0

0.902

A0A1X2HME6

0.902

A0A1X2HJA1

0.809

A0A1X2HRJ4

0.802

A0A1X2HQW3

0.787

A0A1X2H764

0.773

A0A1X2HGJ8

0.773

A0A1X2HIY7

0.744

A0A1X2HCR3

0.743

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2GZP3	A0A1X2H4Z7	Kinase-like domain-containing protein.	RGS domain-containing protein.	0.922
A0A1X2GZP3	A0A1X2H764	Kinase-like domain-containing protein.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.773
A0A1X2GZP3	A0A1X2HCR3	Kinase-like domain-containing protein.	Ankyrin repeat-containing domain protein.	0.743
A0A1X2GZP3	A0A1X2HGJ8	Kinase-like domain-containing protein.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.773
A0A1X2GZP3	A0A1X2HIT0	Kinase-like domain-containing protein.	Uncharacterized protein.	0.902
A0A1X2GZP3	A0A1X2HIY7	Kinase-like domain-containing protein.	Endonuclease/exonuclease/phosphatase.	0.744
A0A1X2GZP3	A0A1X2HJA1	Kinase-like domain-containing protein.	Uncharacterized protein.	0.809
A0A1X2GZP3	A0A1X2HME6	Kinase-like domain-containing protein.	DH domain-containing protein.	0.902
A0A1X2GZP3	A0A1X2HQW3	Kinase-like domain-containing protein.	Uncharacterized protein.	0.787
A0A1X2GZP3	A0A1X2HRJ4	Kinase-like domain-containing protein.	Uncharacterized protein.	0.802
A0A1X2H4Z7	A0A1X2GZP3	RGS domain-containing protein.	Kinase-like domain-containing protein.	0.922
A0A1X2H4Z7	A0A1X2H764	RGS domain-containing protein.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.914
A0A1X2H4Z7	A0A1X2HCR3	RGS domain-containing protein.	Ankyrin repeat-containing domain protein.	0.895
A0A1X2H4Z7	A0A1X2HGJ8	RGS domain-containing protein.	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	0.914
A0A1X2H4Z7	A0A1X2HIT0	RGS domain-containing protein.	Uncharacterized protein.	0.663
A0A1X2H4Z7	A0A1X2HJA1	RGS domain-containing protein.	Uncharacterized protein.	0.931
A0A1X2H4Z7	A0A1X2HME6	RGS domain-containing protein.	DH domain-containing protein.	0.663
A0A1X2H4Z7	A0A1X2HQW3	RGS domain-containing protein.	Uncharacterized protein.	0.540
A0A1X2H764	A0A1X2GZP3	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	Kinase-like domain-containing protein.	0.773
A0A1X2H764	A0A1X2H4Z7	Glycerophosphoryl diester phosphodiesterase family-domain-containing protein.	RGS domain-containing protein.	0.914