A0A1X2H3H5 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2H3H5

Serine protease; Belongs to the peptidase S8 family. (421 aa)

Predicted Functional Partners:

A0A1X2H781

0.599

A0A1X2HVC4

0.599

A0A1X2HP16

0.524

A0A1X2HTP1

0.519

A0A1X2H7A8

0.502

A0A1X2H4B1

0.490

A0A1X2H5E8

0.490

A0A1X2H638

0.490

A0A1X2H661

0.490

A0A1X2H8R8

0.490

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2H3H5	A0A1X2H4B1	Serine protease; Belongs to the peptidase S8 family.	RING-type domain-containing protein.	0.490
A0A1X2H3H5	A0A1X2H5E8	Serine protease; Belongs to the peptidase S8 family.	Uncharacterized protein.	0.490
A0A1X2H3H5	A0A1X2H638	Serine protease; Belongs to the peptidase S8 family.	Urb2/Npa2 family-domain-containing protein.	0.490
A0A1X2H3H5	A0A1X2H661	Serine protease; Belongs to the peptidase S8 family.	Uncharacterized protein.	0.490
A0A1X2H3H5	A0A1X2H781	Serine protease; Belongs to the peptidase S8 family.	FAS1 domain-containing protein.	0.599
A0A1X2H3H5	A0A1X2H7A8	Serine protease; Belongs to the peptidase S8 family.	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	0.502
A0A1X2H3H5	A0A1X2H8R8	Serine protease; Belongs to the peptidase S8 family.	RING-type domain-containing protein.	0.490
A0A1X2H3H5	A0A1X2HP16	Serine protease; Belongs to the peptidase S8 family.	P-loop containing nucleoside triphosphate hydrolase protein.	0.524
A0A1X2H3H5	A0A1X2HTP1	Serine protease; Belongs to the peptidase S8 family.	Zn_dep_PLPC domain-containing protein.	0.519
A0A1X2H3H5	A0A1X2HVC4	Serine protease; Belongs to the peptidase S8 family.	Uncharacterized protein.	0.599
A0A1X2H4B1	A0A1X2H3H5	RING-type domain-containing protein.	Serine protease; Belongs to the peptidase S8 family.	0.490
A0A1X2H5E8	A0A1X2H3H5	Uncharacterized protein.	Serine protease; Belongs to the peptidase S8 family.	0.490
A0A1X2H638	A0A1X2H3H5	Urb2/Npa2 family-domain-containing protein.	Serine protease; Belongs to the peptidase S8 family.	0.490
A0A1X2H661	A0A1X2H3H5	Uncharacterized protein.	Serine protease; Belongs to the peptidase S8 family.	0.490
A0A1X2H781	A0A1X2H3H5	FAS1 domain-containing protein.	Serine protease; Belongs to the peptidase S8 family.	0.599
A0A1X2H781	A0A1X2HTP1	FAS1 domain-containing protein.	Zn_dep_PLPC domain-containing protein.	0.831
A0A1X2H7A8	A0A1X2H3H5	Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery.	Serine protease; Belongs to the peptidase S8 family.	0.502
A0A1X2H8R8	A0A1X2H3H5	RING-type domain-containing protein.	Serine protease; Belongs to the peptidase S8 family.	0.490
A0A1X2HP16	A0A1X2H3H5	P-loop containing nucleoside triphosphate hydrolase protein.	Serine protease; Belongs to the peptidase S8 family.	0.524
A0A1X2HTP1	A0A1X2H3H5	Zn_dep_PLPC domain-containing protein.	Serine protease; Belongs to the peptidase S8 family.	0.519