STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X2H4N6Vps54-like protein-domain-containing protein. (1024 aa)    
Predicted Functional Partners:
A0A1X2HWK7
Vacuolar protein sorting 53-like protein.
   
 0.999
A0A1X2H6R0
Sac2 family-domain-containing protein.
    
 0.996
A0A1X2HTR3
Vps51/Vps67-domain-containing protein.
   
 0.995
A0A1X2H9S3
t-SNARE.
    
 0.893
A0A1X2HQK3
WD40-repeat-containing domain protein.
    
 
 0.890
A0A1X2HV84
t-SNARE.
    
 0.878
A0A1X2HVX6
COG4 transport protein-domain-containing protein.
    
 0.833
A0A1X2H395
Dor1-like family-domain-containing protein.
    
 0.829
A0A1X2HT81
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
    
 0.829
A0A1X2HMD5
Phox homologous domain-containing protein.
    
 0.820
Your Current Organism:
Syncephalastrum racemosum
NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS
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