A0A1X2H5H6 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2H5H6

DNA-directed RNA polymerase II, 19 kDa polypeptide. (205 aa)

Predicted Functional Partners:

A0A1X2H828

0.999

A0A1X2H1N2

0.998

A0A1X2H6Q9

0.998

A0A1X2H7Y9

0.998

A0A1X2H971

0.998

A0A1X2HN28

0.998

A0A1X2HP54

0.998

A0A1X2HP81

0.998

A0A1X2HV76

0.998

A0A1X2GZD6

0.997

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2GZD6	A0A1X2H1N2	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	DNA-directed RNA polymerase.	0.999
A0A1X2GZD6	A0A1X2H5H6	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II, 19 kDa polypeptide.	0.997
A0A1X2GZD6	A0A1X2H6Q9	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.987
A0A1X2GZD6	A0A1X2H7Y9	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1X2GZD6	A0A1X2H828	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	HRDC-like protein.	0.997
A0A1X2GZD6	A0A1X2H971	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
A0A1X2GZD6	A0A1X2HN28	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	DNA-directed RNA polymerase.	0.999
A0A1X2GZD6	A0A1X2HP54	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	RNA polymerase.	0.999
A0A1X2GZD6	A0A1X2HP81	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	RNA polymerase.	0.999
A0A1X2GZD6	A0A1X2HV76	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	DNA directed RNA polymerase.	0.999
A0A1X2H1N2	A0A1X2GZD6	DNA-directed RNA polymerase.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.999
A0A1X2H1N2	A0A1X2H5H6	DNA-directed RNA polymerase.	DNA-directed RNA polymerase II, 19 kDa polypeptide.	0.998
A0A1X2H1N2	A0A1X2H6Q9	DNA-directed RNA polymerase.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.997
A0A1X2H1N2	A0A1X2H7Y9	DNA-directed RNA polymerase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
A0A1X2H1N2	A0A1X2H828	DNA-directed RNA polymerase.	HRDC-like protein.	0.994
A0A1X2H1N2	A0A1X2H971	DNA-directed RNA polymerase.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
A0A1X2H1N2	A0A1X2HN28	DNA-directed RNA polymerase.	DNA-directed RNA polymerase.	0.999
A0A1X2H1N2	A0A1X2HP54	DNA-directed RNA polymerase.	RNA polymerase.	0.999
A0A1X2H1N2	A0A1X2HP81	DNA-directed RNA polymerase.	RNA polymerase.	0.999
A0A1X2H1N2	A0A1X2HV76	DNA-directed RNA polymerase.	DNA directed RNA polymerase.	0.997