A0A1X2H6M2 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2H6M2

Nucleoside diphosphate kinase; Belongs to the NDK family. (230 aa)

Predicted Functional Partners:

A0A1X2HQJ3

0.970

A0A1X2H9U3

0.961

A0A1X2HCY5

0.960

A0A1X2HCF2

0.959

A0A1X2HJC5

0.959

A0A1X2H6A7

0.958

A0A1X2HVF2

0.951

A0A1X2H0A9

0.948

A0A1X2HI18

0.947

A0A1X2HER9

0.934

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2H0A9	A0A1X2H6A7	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S6.	0.999
A0A1X2H0A9	A0A1X2H6M2	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Nucleoside diphosphate kinase; Belongs to the NDK family.	0.948
A0A1X2H0A9	A0A1X2H9U3	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A1X2H0A9	A0A1X2HCF2	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S2, flavodoxin-like domain-containing protein.	0.999
A0A1X2H0A9	A0A1X2HCY5	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S12/S23-domain-containing protein.	0.998
A0A1X2H0A9	A0A1X2HER9	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S10 domain-containing protein.	0.999
A0A1X2H0A9	A0A1X2HI18	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
A0A1X2H0A9	A0A1X2HJC5	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.999
A0A1X2H0A9	A0A1X2HQJ3	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S16.	0.999
A0A1X2H0A9	A0A1X2HVF2	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein S9/S16-domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A1X2H6A7	A0A1X2H0A9	30S ribosomal protein S6.	Ribosomal protein S5 domain 2-type protein; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A1X2H6A7	A0A1X2H6M2	30S ribosomal protein S6.	Nucleoside diphosphate kinase; Belongs to the NDK family.	0.958
A0A1X2H6A7	A0A1X2H9U3	30S ribosomal protein S6.	Ribosomal protein S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.998
A0A1X2H6A7	A0A1X2HCF2	30S ribosomal protein S6.	Ribosomal protein S2, flavodoxin-like domain-containing protein.	0.999
A0A1X2H6A7	A0A1X2HCY5	30S ribosomal protein S6.	Ribosomal protein S12/S23-domain-containing protein.	0.999
A0A1X2H6A7	A0A1X2HER9	30S ribosomal protein S6.	Ribosomal protein S10 domain-containing protein.	0.999
A0A1X2H6A7	A0A1X2HI18	30S ribosomal protein S6.	Uncharacterized protein.	0.999
A0A1X2H6A7	A0A1X2HJC5	30S ribosomal protein S6.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.999
A0A1X2H6A7	A0A1X2HQJ3	30S ribosomal protein S6.	30S ribosomal protein S16.	0.999
A0A1X2H6A7	A0A1X2HVF2	30S ribosomal protein S6.	Ribosomal protein S9/S16-domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	0.999