STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X2H7Z5Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (390 aa)    
Predicted Functional Partners:
A0A1X2HRS9
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.992
A0A1X2HFL2
Ribosomal protein S27a-domain-containing protein.
    
   0.904
A0A1X2HK53
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 
 0.903
A0A1X2HA61
40S ribosomal protein.
   
   0.894
A0A1X2HI62
Ribosomal protein L35A.
   
   0.893
A0A1X2HPQ1
Ribosomal_L18_c domain-containing protein.
   
   0.891
A0A1X2H1P4
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
   0.889
A0A1X2HCW0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
   0.888
A0A1X2GZP4
60S ribosomal protein.
    
   0.887
A0A1X2H728
Putative 60S ribosomal protein L28; Belongs to the universal ribosomal protein uL15 family.
   
   0.887
Your Current Organism:
Syncephalastrum racemosum
NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS
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