STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X2H8T8Ubiquitin carboxyl-terminal hydrolase. (607 aa)    
Predicted Functional Partners:
A0A1X2H5E4
SCA7, zinc-binding domain-domain-containing protein.
    
 0.996
SUS1
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
    
 0.996
A0A1X2HH79
Bromo domain-containing protein.
    
 0.995
A0A1X2H0U2
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.988
A0A1X2H8Q5
Uncharacterized protein.
    
 0.987
A0A1X2HEM6
Putative histone acetyltransferase.
    
 0.987
A0A1X2H6B0
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.985
A0A1X2HPC4
Transcription initiation factor IID, 31kD subunit-domain-containing protein.
    
 0.982
A0A1X2HLF8
Transcription initiation factor TFIID subunit A-domain-containing protein.
    
 0.981
A0A1X2HQ24
WD40-repeat-containing domain protein.
   
 0.981
Your Current Organism:
Syncephalastrum racemosum
NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS
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