A0A1X2HC28 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2HC28

Uncharacterized protein. (344 aa)

Predicted Functional Partners:

A0A1X2H2H8

0.730

A0A1X2HH09

0.581

A0A1X2HL56

0.577

A0A1X2H1C9

0.510

A0A1X2H9H1

0.510

A0A1X2HBK5

0.510

A0A1X2H9Q3

0.506

A0A1X2HD33

0.506

A0A1X2HA36

0.489

A0A1X2HNA2

0.489

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2H1C9	A0A1X2H2H8	Uncharacterized protein.	Oxidoreductase, molybdopterin-binding domain-containing protein.	0.767
A0A1X2H1C9	A0A1X2H9H1	Uncharacterized protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.632
A0A1X2H1C9	A0A1X2HA36	Uncharacterized protein.	FAD dependent oxidoreductase-domain-containing protein.	0.631
A0A1X2H1C9	A0A1X2HC28	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A1X2H1C9	A0A1X2HNA2	Uncharacterized protein.	FAD dependent oxidoreductase.	0.631
A0A1X2H2H8	A0A1X2H1C9	Oxidoreductase, molybdopterin-binding domain-containing protein.	Uncharacterized protein.	0.767
A0A1X2H2H8	A0A1X2H9H1	Oxidoreductase, molybdopterin-binding domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.767
A0A1X2H2H8	A0A1X2HBK5	Oxidoreductase, molybdopterin-binding domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.767
A0A1X2H2H8	A0A1X2HC28	Oxidoreductase, molybdopterin-binding domain-containing protein.	Uncharacterized protein.	0.730
A0A1X2H2H8	A0A1X2HL56	Oxidoreductase, molybdopterin-binding domain-containing protein.	Thioredoxin-like [2Fe-2S] ferredoxin-domain-containing protein.	0.536
A0A1X2H9H1	A0A1X2H1C9	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.632
A0A1X2H9H1	A0A1X2H2H8	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Oxidoreductase, molybdopterin-binding domain-containing protein.	0.767
A0A1X2H9H1	A0A1X2HA36	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	FAD dependent oxidoreductase-domain-containing protein.	0.631
A0A1X2H9H1	A0A1X2HC28	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Uncharacterized protein.	0.510
A0A1X2H9H1	A0A1X2HNA2	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	FAD dependent oxidoreductase.	0.631
A0A1X2H9Q3	A0A1X2HC28	Beta-hexosaminidase.	Uncharacterized protein.	0.506
A0A1X2HA36	A0A1X2H1C9	FAD dependent oxidoreductase-domain-containing protein.	Uncharacterized protein.	0.631
A0A1X2HA36	A0A1X2H9H1	FAD dependent oxidoreductase-domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.631
A0A1X2HA36	A0A1X2HBK5	FAD dependent oxidoreductase-domain-containing protein.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.631
A0A1X2HA36	A0A1X2HC28	FAD dependent oxidoreductase-domain-containing protein.	Uncharacterized protein.	0.489