A0A1X2HKP7 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2HKP7

Acyl-CoA dehydrogenase/oxidase. (422 aa)

Predicted Functional Partners:

A0A1X2H583

0.925

A0A1X2HSA8

0.925

A0A1X2HWB3

0.923

A0A1X2HEN7

0.922

A0A1X2H1W6

0.899

A0A1X2HMU2

0.892

A0A1X2HUS0

0.892

A0A1X2H132

0.885

A0A1X2H627

0.885

A0A1X2HHK1

0.885

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2H132	A0A1X2H1W6	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	ETF domain-containing protein.	0.701
A0A1X2H132	A0A1X2H583	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	ClpP/crotonase-like domain-containing protein.	0.937
A0A1X2H132	A0A1X2H627	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.898
A0A1X2H132	A0A1X2HEN7	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.759
A0A1X2H132	A0A1X2HHK1	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	SCP2 sterol-binding domain-containing protein.	0.897
A0A1X2H132	A0A1X2HKP7	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-CoA dehydrogenase/oxidase.	0.885
A0A1X2H132	A0A1X2HMU2	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Carboxyl transferase.	0.805
A0A1X2H132	A0A1X2HSA8	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	ClpP/crotonase-like domain-containing protein.	0.937
A0A1X2H132	A0A1X2HUS0	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	WD_REPEATS_REGION domain-containing protein.	0.525
A0A1X2H132	A0A1X2HWB3	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	Methylcrotonoyl-CoA carboxylase beta chain.	0.805
A0A1X2H1W6	A0A1X2H132	ETF domain-containing protein.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.701
A0A1X2H1W6	A0A1X2H583	ETF domain-containing protein.	ClpP/crotonase-like domain-containing protein.	0.824
A0A1X2H1W6	A0A1X2H627	ETF domain-containing protein.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.701
A0A1X2H1W6	A0A1X2HEN7	ETF domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.732
A0A1X2H1W6	A0A1X2HHK1	ETF domain-containing protein.	SCP2 sterol-binding domain-containing protein.	0.701
A0A1X2H1W6	A0A1X2HKP7	ETF domain-containing protein.	Acyl-CoA dehydrogenase/oxidase.	0.899
A0A1X2H1W6	A0A1X2HSA8	ETF domain-containing protein.	ClpP/crotonase-like domain-containing protein.	0.824
A0A1X2H1W6	A0A1X2HUS0	ETF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A1X2H583	A0A1X2H132	ClpP/crotonase-like domain-containing protein.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.937
A0A1X2H583	A0A1X2H1W6	ClpP/crotonase-like domain-containing protein.	ETF domain-containing protein.	0.824