STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X2HP80Vta1 like-domain-containing protein. (326 aa)    
Predicted Functional Partners:
A0A1X2HVD1
Snf7-domain-containing protein.
   
 0.998
A0A1X2H9A2
Snf7 family.
    
 0.997
A0A1X2HBI9
Vps4 protein; Belongs to the AAA ATPase family.
   
 0.997
A0A1X2HDG3
Regulator of Vps4 activity in the MVB pathway-domain-containing protein.
   
 
 0.968
A0A1X2HC25
GTP_cyclohydroI domain-containing protein.
   
   0.947
A0A1X2H345
Pre-mRNA-splicing factor SPF27.
   
   0.944
A0A1X2HGK4
VPS4-associated protein 1.
    
   0.942
A0A1X2H1L4
Snf7 family.
    
 0.937
A0A1X2H480
Snf7-domain-containing protein.
    
 0.916
A0A1X2H2W8
Snf7-domain-containing protein.
    
 0.893
Your Current Organism:
Syncephalastrum racemosum
NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.