A0A1X2HRP0 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2HRP0

Translation protein SH3-like domain-containing protein. (189 aa)

Predicted Functional Partners:

A0A1X2HJY3

0.998

A0A1X2HMF4

0.998

A0A1X2HWF1

0.998

A0A1X2HG00

0.997

A0A1X2HGT1

0.997

A0A1X2HWL5

0.996

A0A1X2GZ50

0.994

A0A1X2HVF2

0.994

A0A1X2H0A5

0.992

A0A1X2HPQ1

0.992

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2GZ50	A0A1X2H0A5	Ribosomal protein L4/L1 family-domain-containing protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.997
A0A1X2GZ50	A0A1X2HG00	Ribosomal protein L4/L1 family-domain-containing protein.	Ribosomal protein L18e/L15P.	0.997
A0A1X2GZ50	A0A1X2HGT1	Ribosomal protein L4/L1 family-domain-containing protein.	Translation protein; Belongs to the universal ribosomal protein uL3 family.	0.997
A0A1X2GZ50	A0A1X2HJY3	Ribosomal protein L4/L1 family-domain-containing protein.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.996
A0A1X2GZ50	A0A1X2HMF4	Ribosomal protein L4/L1 family-domain-containing protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A1X2GZ50	A0A1X2HPQ1	Ribosomal protein L4/L1 family-domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.986
A0A1X2GZ50	A0A1X2HRP0	Ribosomal protein L4/L1 family-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.994
A0A1X2GZ50	A0A1X2HVF2	Ribosomal protein L4/L1 family-domain-containing protein.	Ribosomal protein S9/S16-domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	0.998
A0A1X2GZ50	A0A1X2HWF1	Ribosomal protein L4/L1 family-domain-containing protein.	50S ribosomal protein L13.	0.998
A0A1X2GZ50	A0A1X2HWL5	Ribosomal protein L4/L1 family-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.998
A0A1X2H0A5	A0A1X2GZ50	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L4/L1 family-domain-containing protein.	0.997
A0A1X2H0A5	A0A1X2HG00	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L18e/L15P.	0.998
A0A1X2H0A5	A0A1X2HGT1	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Translation protein; Belongs to the universal ribosomal protein uL3 family.	0.998
A0A1X2H0A5	A0A1X2HJY3	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.998
A0A1X2H0A5	A0A1X2HMF4	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
A0A1X2H0A5	A0A1X2HPQ1	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal_L18_c domain-containing protein.	0.999
A0A1X2H0A5	A0A1X2HRP0	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Translation protein SH3-like domain-containing protein.	0.992
A0A1X2H0A5	A0A1X2HVF2	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein S9/S16-domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	0.996
A0A1X2H0A5	A0A1X2HWF1	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	50S ribosomal protein L13.	0.998
A0A1X2H0A5	A0A1X2HWL5	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Translation protein SH3-like domain-containing protein.	0.999