A0A1X2HT71 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2HT71

Uncharacterized protein. (1001 aa)

Predicted Functional Partners:

A0A1X2HTC9

0.853

A0A1X2H0C5

0.849

A0A1X2H171

0.849

A0A1X2H188

0.849

A0A1X2H3C9

0.849

A0A1X2H6W9

0.849

A0A1X2H8V4

0.849

A0A1X2H9K1

0.849

A0A1X2HCI3

0.849

A0A1X2HCI4

0.849

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1X2H0C5	A0A1X2H6W9	Small GTPase superfamily.	Small GTPase Rac protein 1.	0.750
A0A1X2H0C5	A0A1X2H8V4	Small GTPase superfamily.	Putative Rac1 GTP binding protein.	0.750
A0A1X2H0C5	A0A1X2HT71	Small GTPase superfamily.	Uncharacterized protein.	0.849
A0A1X2H0C5	A0A1X2HTC9	Small GTPase superfamily.	Cell division control protein 42.	0.748
A0A1X2H171	A0A1X2HT71	Uncharacterized protein.	Uncharacterized protein.	0.849
A0A1X2H188	A0A1X2HT71	CigA protein.	Uncharacterized protein.	0.849
A0A1X2H3C9	A0A1X2HT71	Uncharacterized protein.	Uncharacterized protein.	0.849
A0A1X2H6W9	A0A1X2H0C5	Small GTPase Rac protein 1.	Small GTPase superfamily.	0.750
A0A1X2H6W9	A0A1X2HCI3	Small GTPase Rac protein 1.	P-loop containing nucleoside triphosphate hydrolase protein.	0.745
A0A1X2H6W9	A0A1X2HCI4	Small GTPase Rac protein 1.	P-loop containing nucleoside triphosphate hydrolase protein.	0.747
A0A1X2H6W9	A0A1X2HT71	Small GTPase Rac protein 1.	Uncharacterized protein.	0.849
A0A1X2H6W9	A0A1X2HTC9	Small GTPase Rac protein 1.	Cell division control protein 42.	0.455
A0A1X2H8V4	A0A1X2H0C5	Putative Rac1 GTP binding protein.	Small GTPase superfamily.	0.750
A0A1X2H8V4	A0A1X2HCI3	Putative Rac1 GTP binding protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.745
A0A1X2H8V4	A0A1X2HCI4	Putative Rac1 GTP binding protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.747
A0A1X2H8V4	A0A1X2HT71	Putative Rac1 GTP binding protein.	Uncharacterized protein.	0.849
A0A1X2H8V4	A0A1X2HTC9	Putative Rac1 GTP binding protein.	Cell division control protein 42.	0.455
A0A1X2H9K1	A0A1X2HT71	Small GTPase superfamily.	Uncharacterized protein.	0.849
A0A1X2HCI3	A0A1X2H6W9	P-loop containing nucleoside triphosphate hydrolase protein.	Small GTPase Rac protein 1.	0.745
A0A1X2HCI3	A0A1X2H8V4	P-loop containing nucleoside triphosphate hydrolase protein.	Putative Rac1 GTP binding protein.	0.745