A0A1X2HTH9 protein (Syncephalastrum racemosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1X2HTH9

P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (499 aa)

Predicted Functional Partners:

LSM1

0.973

A0A1X2HJX5

0.972

A0A1X2H831

0.969

A0A1X2HEF6

0.967

A0A1X2H625

0.939

A0A1X2HKP6

0.939

A0A1X2HJR4

0.936

A0A1X2HVM5

0.931

A0A1X2H429

0.910

A0A1X2HLB3

0.905

Your Current Organism:

Syncephalastrum racemosum

NCBI taxonomy Id: 13706
Other names: S. racemosum, fungal sp. RS07OS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1X2H429	A0A1X2H625	A0A1X2H429	A0A1X2H625	NUDIX hydrolase domain-like protein.	YjeF N-terminal domain-containing protein.	0.973
A0A1X2H429	A0A1X2H831	A0A1X2H429	A0A1X2H831	NUDIX hydrolase domain-like protein.	Uncharacterized protein.	0.987
A0A1X2H429	A0A1X2HEF6	A0A1X2H429	A0A1X2HEF6	NUDIX hydrolase domain-like protein.	Sm domain-containing protein.	0.809
A0A1X2H429	A0A1X2HJR4	A0A1X2H429	A0A1X2HJR4	NUDIX hydrolase domain-like protein.	Ribonuclease H-like domain-containing protein.	0.887
A0A1X2H429	A0A1X2HJX5	A0A1X2H429	A0A1X2HJX5	NUDIX hydrolase domain-like protein.	Topoisomerase II-associated protein PAT1.	0.996
A0A1X2H429	A0A1X2HKP6	A0A1X2H429	A0A1X2HKP6	NUDIX hydrolase domain-like protein.	YjeF N-terminal domain-containing protein.	0.973
A0A1X2H429	A0A1X2HLB3	A0A1X2H429	A0A1X2HLB3	NUDIX hydrolase domain-like protein.	Scd6-like Sm domain-domain-containing protein.	0.879
A0A1X2H429	A0A1X2HTH9	A0A1X2H429	A0A1X2HTH9	NUDIX hydrolase domain-like protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.910
A0A1X2H429	A0A1X2HVM5	A0A1X2H429	A0A1X2HVM5	NUDIX hydrolase domain-like protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.862
A0A1X2H429	LSM1	A0A1X2H429	A0A1X2HD48	NUDIX hydrolase domain-like protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.956
A0A1X2H625	A0A1X2H429	A0A1X2H625	A0A1X2H429	YjeF N-terminal domain-containing protein.	NUDIX hydrolase domain-like protein.	0.973
A0A1X2H625	A0A1X2H831	A0A1X2H625	A0A1X2H831	YjeF N-terminal domain-containing protein.	Uncharacterized protein.	0.964
A0A1X2H625	A0A1X2HEF6	A0A1X2H625	A0A1X2HEF6	YjeF N-terminal domain-containing protein.	Sm domain-containing protein.	0.745
A0A1X2H625	A0A1X2HJX5	A0A1X2H625	A0A1X2HJX5	YjeF N-terminal domain-containing protein.	Topoisomerase II-associated protein PAT1.	0.960
A0A1X2H625	A0A1X2HLB3	A0A1X2H625	A0A1X2HLB3	YjeF N-terminal domain-containing protein.	Scd6-like Sm domain-domain-containing protein.	0.680
A0A1X2H625	A0A1X2HTH9	A0A1X2H625	A0A1X2HTH9	YjeF N-terminal domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.939
A0A1X2H625	LSM1	A0A1X2H625	A0A1X2HD48	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.864
A0A1X2H831	A0A1X2H429	A0A1X2H831	A0A1X2H429	Uncharacterized protein.	NUDIX hydrolase domain-like protein.	0.987
A0A1X2H831	A0A1X2H625	A0A1X2H831	A0A1X2H625	Uncharacterized protein.	YjeF N-terminal domain-containing protein.	0.964
A0A1X2H831	A0A1X2HEF6	A0A1X2H831	A0A1X2HEF6	Uncharacterized protein.	Sm domain-containing protein.	0.847