STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yoaSUnannotated protein. (160 aa)    
Predicted Functional Partners:
MHA01_31950
Unannotated protein.
 
    0.937
MHA01_11090
Unannotated protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.865
ydeM
Unannotated protein.
  
 0.631
MHA01_04700
Unannotated protein.
  
 0.543
MHA01_11080
Unannotated protein.
  
 0.543
rsgA
Unannotated protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
    
  0.499
MHA01_31970
Unannotated protein.
       0.465
fadD
Unannotated protein.
   
  0.464
MHA01_11070
Unannotated protein.
   
  0.464
ykkB
Unannotated protein.
    
  0.435
Your Current Organism:
Marinococcus halophilus
NCBI taxonomy Id: 1371
Other names: ATCC 27964, CCM 2706, CIP 104819, DSM 20408, IAM 12844, JCM 2479, KCTC 2843, LMG 17439, LMG:17439, NBRC 102359, Planococcus halophilus, strain HK 718
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.