chiPu_0021407 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0021407

ARID domain-containing protein. (180 aa)

Predicted Functional Partners:

chiPu_0013123

0.975

chiPu_0014971

0.975

chiPu_0011889

0.959

chiPu_0013502

0.959

chiPu_0027451

0.959

chiPu_0032971

0.959

chiPu_0005647

0.949

chiPu_0010068

0.949

chiPu_0013829

0.949

chiPu_0018612

0.934

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0005647	chiPu_0010068	A0A401S9Z3	A0A401SML1	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.525
chiPu_0005647	chiPu_0011889	A0A401S9Z3	A0A401SSQ1	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
chiPu_0005647	chiPu_0013123	A0A401S9Z3	A0A401SW95	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP-synt_DE_N domain-containing protein.	0.999
chiPu_0005647	chiPu_0013502	A0A401S9Z3	A0A401SXA9	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.999
chiPu_0005647	chiPu_0014971	A0A401S9Z3	A0A401T1I9	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.999
chiPu_0005647	chiPu_0018612	A0A401S9Z3	A0A401RNZ5	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.999
chiPu_0005647	chiPu_0021407	A0A401S9Z3	A0A401REL9	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ARID domain-containing protein.	0.949
chiPu_0005647	chiPu_0027451	A0A401S9Z3	A0A401TL72	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.998
chiPu_0005647	chiPu_0032971	A0A401S9Z3	A0A401U238	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.997
chiPu_0010068	chiPu_0005647	A0A401SML1	A0A401S9Z3	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.525
chiPu_0010068	chiPu_0011889	A0A401SML1	A0A401SSQ1	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.997
chiPu_0010068	chiPu_0013123	A0A401SML1	A0A401SW95	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP-synt_DE_N domain-containing protein.	0.998
chiPu_0010068	chiPu_0013502	A0A401SML1	A0A401SXA9	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein.	0.995
chiPu_0010068	chiPu_0013829	A0A401SML1	A0A401SYF4	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein; Belongs to the V-ATPase proteolipid subunit family.	0.999
chiPu_0010068	chiPu_0014971	A0A401SML1	A0A401T1I9	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein.	0.998
chiPu_0010068	chiPu_0018612	A0A401SML1	A0A401RNZ5	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.991
chiPu_0010068	chiPu_0021407	A0A401SML1	A0A401REL9	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ARID domain-containing protein.	0.949
chiPu_0010068	chiPu_0027451	A0A401SML1	A0A401TL72	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.997
chiPu_0010068	chiPu_0032971	A0A401SML1	A0A401U238	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein.	0.995
chiPu_0011889	chiPu_0005647	A0A401SSQ1	A0A401S9Z3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP-synt_C domain-containing protein; Belongs to the ATPase C chain family.	0.998