chiPu_0017411 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0017411

Uncharacterized protein. (435 aa)

Predicted Functional Partners:

chiPu_0018702

0.998

chiPu_0015641

0.997

chiPu_0018776

0.995

chiPu_0016396

0.992

chiPu_0024259

0.992

chiPu_0026736

0.989

chiPu_0016397

0.988

chiPu_0029022

0.985

chiPu_0026524

0.983

chiPu_0009132

0.959

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0009132	chiPu_0015641	A0A401SJU6	A0A401T3D9	Uncharacterized protein.	Uncharacterized protein.	0.951
chiPu_0009132	chiPu_0016396	A0A401SJU6	A0A401T5G2	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.922
chiPu_0009132	chiPu_0016397	A0A401SJU6	A0A401T5H4	Uncharacterized protein.	Uncharacterized protein.	0.922
chiPu_0009132	chiPu_0017411	A0A401SJU6	A0A401RFQ9	Uncharacterized protein.	Uncharacterized protein.	0.959
chiPu_0009132	chiPu_0018702	A0A401SJU6	A0A401RPL8	Uncharacterized protein.	Uncharacterized protein.	0.957
chiPu_0009132	chiPu_0018776	A0A401SJU6	A0A401RR70	Uncharacterized protein.	Uncharacterized protein.	0.940
chiPu_0009132	chiPu_0024259	A0A401SJU6	A0A401TCI8	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.922
chiPu_0009132	chiPu_0026524	A0A401SJU6	A0A401TJ14	Uncharacterized protein.	Uncharacterized protein.	0.854
chiPu_0009132	chiPu_0026736	A0A401SJU6	A0A401TIM0	Uncharacterized protein.	Uncharacterized protein.	0.854
chiPu_0009132	chiPu_0029022	A0A401SJU6	A0A401TPY5	Uncharacterized protein.	Uncharacterized protein.	0.880
chiPu_0015641	chiPu_0009132	A0A401T3D9	A0A401SJU6	Uncharacterized protein.	Uncharacterized protein.	0.951
chiPu_0015641	chiPu_0016396	A0A401T3D9	A0A401T5G2	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.992
chiPu_0015641	chiPu_0016397	A0A401T3D9	A0A401T5H4	Uncharacterized protein.	Uncharacterized protein.	0.989
chiPu_0015641	chiPu_0017411	A0A401T3D9	A0A401RFQ9	Uncharacterized protein.	Uncharacterized protein.	0.997
chiPu_0015641	chiPu_0018702	A0A401T3D9	A0A401RPL8	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0015641	chiPu_0018776	A0A401T3D9	A0A401RR70	Uncharacterized protein.	Uncharacterized protein.	0.995
chiPu_0015641	chiPu_0024259	A0A401T3D9	A0A401TCI8	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.992
chiPu_0015641	chiPu_0026524	A0A401T3D9	A0A401TJ14	Uncharacterized protein.	Uncharacterized protein.	0.984
chiPu_0015641	chiPu_0026736	A0A401T3D9	A0A401TIM0	Uncharacterized protein.	Uncharacterized protein.	0.989
chiPu_0016396	chiPu_0009132	A0A401T5G2	A0A401SJU6	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.922