chiPu_0017545 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0017545

P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. (389 aa)

Predicted Functional Partners:

chiPu_0009918

0.928

chiPu_0018064

0.922

chiPu_0015274

0.919

chiPu_0002431

0.909

chiPu_0004003

0.834

chiPu_0018390

0.831

chiPu_0005177

0.831

chiPu_0015041

0.824

chiPu_0021730

0.813

chiPu_0020946

0.813

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0002431	chiPu_0004003	A0A401S0U7	A0A401S5B0	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.841
chiPu_0002431	chiPu_0015041	A0A401S0U7	A0A401T1R4	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.891
chiPu_0002431	chiPu_0015274	A0A401S0U7	A0A401T297	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.893
chiPu_0002431	chiPu_0017545	A0A401S0U7	A0A401RGY5	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.909
chiPu_0004003	chiPu_0002431	A0A401S5B0	A0A401S0U7	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.841
chiPu_0004003	chiPu_0015041	A0A401S5B0	A0A401T1R4	Uncharacterized protein.	Uncharacterized protein.	0.905
chiPu_0004003	chiPu_0015274	A0A401S5B0	A0A401T297	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.810
chiPu_0004003	chiPu_0017545	A0A401S5B0	A0A401RGY5	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.834
chiPu_0005177	chiPu_0017545	A0A401S8N4	A0A401RGY5	RanBP2-type domain-containing protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.831
chiPu_0009918	chiPu_0017545	A0A401SM46	A0A401RGY5	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.928
chiPu_0009918	chiPu_0018064	A0A401SM46	A0A401RKV5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.996
chiPu_0015041	chiPu_0002431	A0A401T1R4	A0A401S0U7	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.891
chiPu_0015041	chiPu_0004003	A0A401T1R4	A0A401S5B0	Uncharacterized protein.	Uncharacterized protein.	0.905
chiPu_0015041	chiPu_0015274	A0A401T1R4	A0A401T297	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.816
chiPu_0015041	chiPu_0017545	A0A401T1R4	A0A401RGY5	Uncharacterized protein.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.824
chiPu_0015274	chiPu_0002431	A0A401T297	A0A401S0U7	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.893
chiPu_0015274	chiPu_0004003	A0A401T297	A0A401S5B0	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.810
chiPu_0015274	chiPu_0015041	A0A401T297	A0A401T1R4	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	Uncharacterized protein.	0.816
chiPu_0015274	chiPu_0017545	A0A401T297	A0A401RGY5	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.919
chiPu_0017545	chiPu_0002431	A0A401RGY5	A0A401S0U7	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.909