chiPu_0020672 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0020672

B30.2/SPRY domain-containing protein. (379 aa)

Predicted Functional Partners:

chiPu_0006843

0.772

chiPu_0010687

0.632

chiPu_0008047

0.624

chiPu_0020504

0.602

chiPu_0019959

0.601

chiPu_0008251

0.553

chiPu_0000405

0.542

chiPu_0006464

0.537

chiPu_0003190

0.533

chiPu_0015632

0.527

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0000405	chiPu_0003190	A0A401RV75	A0A401S352	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.758
chiPu_0000405	chiPu_0006843	A0A401RV75	A0A401SDI4	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.957
chiPu_0000405	chiPu_0010687	A0A401RV75	A0A401SPC0	Uncharacterized protein.	Uncharacterized protein.	0.758
chiPu_0000405	chiPu_0015632	A0A401RV75	A0A401T3A2	Uncharacterized protein.	Uncharacterized protein.	0.980
chiPu_0000405	chiPu_0019959	A0A401RV75	A0A401RTM5	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.678
chiPu_0000405	chiPu_0020504	A0A401RV75	A0A401RGE9	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.950
chiPu_0000405	chiPu_0020672	A0A401RV75	A0A401RI64	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.542
chiPu_0003190	chiPu_0000405	A0A401S352	A0A401RV75	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.758
chiPu_0003190	chiPu_0006464	A0A401S352	A0A401SCB1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.930
chiPu_0003190	chiPu_0006843	A0A401S352	A0A401SDI4	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
chiPu_0003190	chiPu_0008047	A0A401S352	A0A401SGV1	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.758
chiPu_0003190	chiPu_0008251	A0A401S352	A0A401SHB3	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.549
chiPu_0003190	chiPu_0010687	A0A401S352	A0A401SPC0	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.999
chiPu_0003190	chiPu_0015632	A0A401S352	A0A401T3A2	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Uncharacterized protein.	0.758
chiPu_0003190	chiPu_0019959	A0A401S352	A0A401RTM5	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.942
chiPu_0003190	chiPu_0020504	A0A401S352	A0A401RGE9	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
chiPu_0003190	chiPu_0020672	A0A401S352	A0A401RI64	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	B30.2/SPRY domain-containing protein.	0.533
chiPu_0006464	chiPu_0003190	A0A401SCB1	A0A401S352	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.930
chiPu_0006464	chiPu_0006843	A0A401SCB1	A0A401SDI4	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.921
chiPu_0006464	chiPu_0010687	A0A401SCB1	A0A401SPC0	Uncharacterized protein.	Uncharacterized protein.	0.930