chiPu_0017899 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0017899

Uncharacterized protein. (460 aa)

Predicted Functional Partners:

chiPu_0017900

0.932

chiPu_0021332

0.693

chiPu_0004530

0.676

chiPu_0004409

0.674

chiPu_0013135

0.674

chiPu_0002283

0.673

chiPu_0005084

0.673

chiPu_0018427

0.670

chiPu_0001052

0.670

chiPu_0010195

0.670

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001052	chiPu_0002283	A0A401RWX7	A0A401S0E1	PlsC domain-containing protein.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.899
chiPu_0001052	chiPu_0004530	A0A401RWX7	A0A401S6V1	PlsC domain-containing protein.	Diacylglycerol kinase.	0.824
chiPu_0001052	chiPu_0005084	A0A401RWX7	A0A401S8H1	PlsC domain-containing protein.	PlsC domain-containing protein.	0.893
chiPu_0001052	chiPu_0010195	A0A401RWX7	A0A401SMU1	PlsC domain-containing protein.	PlsC domain-containing protein.	0.861
chiPu_0001052	chiPu_0013135	A0A401RWX7	A0A401SWA9	PlsC domain-containing protein.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.904
chiPu_0001052	chiPu_0017899	A0A401RWX7	A0A401RJR2	PlsC domain-containing protein.	Uncharacterized protein.	0.670
chiPu_0001052	chiPu_0017900	A0A401RWX7	A0A401RJN9	PlsC domain-containing protein.	DAGKa domain-containing protein.	0.670
chiPu_0001052	chiPu_0018427	A0A401RWX7	A0A401RN96	PlsC domain-containing protein.	1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	0.897
chiPu_0001052	chiPu_0021332	A0A401RWX7	A0A401RQ39	PlsC domain-containing protein.	Diacylglycerol kinase.	0.815
chiPu_0002283	chiPu_0001052	A0A401S0E1	A0A401RWX7	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	PlsC domain-containing protein.	0.899
chiPu_0002283	chiPu_0004530	A0A401S0E1	A0A401S6V1	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Diacylglycerol kinase.	0.823
chiPu_0002283	chiPu_0005084	A0A401S0E1	A0A401S8H1	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	PlsC domain-containing protein.	0.898
chiPu_0002283	chiPu_0010195	A0A401S0E1	A0A401SMU1	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	PlsC domain-containing protein.	0.824
chiPu_0002283	chiPu_0013135	A0A401S0E1	A0A401SWA9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.814
chiPu_0002283	chiPu_0017899	A0A401S0E1	A0A401RJR2	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.673
chiPu_0002283	chiPu_0017900	A0A401S0E1	A0A401RJN9	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	DAGKa domain-containing protein.	0.673
chiPu_0002283	chiPu_0018427	A0A401S0E1	A0A401RN96	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.	0.967
chiPu_0002283	chiPu_0021332	A0A401S0E1	A0A401RQ39	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Diacylglycerol kinase.	0.821
chiPu_0004409	chiPu_0004530	A0A401S6H3	A0A401S6V1	Uncharacterized protein.	Diacylglycerol kinase.	0.877
chiPu_0004409	chiPu_0017899	A0A401S6H3	A0A401RJR2	Uncharacterized protein.	Uncharacterized protein.	0.674