chiPu_0017915 protein (Chiloscyllium punctatum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

chiPu_0017915

Uncharacterized protein. (400 aa)

Predicted Functional Partners:

chiPu_0001287

0.784

chiPu_0000098

0.752

chiPu_0006947

0.721

chiPu_0008757

0.720

chiPu_0023029

0.717

chiPu_0026478

0.715

chiPu_0002188

0.703

chiPu_0005842

0.703

chiPu_0013348

0.686

chiPu_0007234

0.682

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0000098	chiPu_0017915	A0A401RNC9	A0A401RJS2	CS domain-containing protein.	Uncharacterized protein.	0.752
chiPu_0001287	chiPu_0007234	A0A401RXM0	A0A401SEP7	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.670
chiPu_0001287	chiPu_0013348	A0A401RXM0	A0A401SWW3	Uncharacterized protein.	Uncharacterized protein.	0.705
chiPu_0001287	chiPu_0017915	A0A401RXM0	A0A401RJS2	Uncharacterized protein.	Uncharacterized protein.	0.784
chiPu_0001287	chiPu_0026478	A0A401RXM0	A0A401TJ44	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.646
chiPu_0002188	chiPu_0013348	A0A401S0D6	A0A401SWW3	Uncharacterized protein.	Uncharacterized protein.	0.451
chiPu_0002188	chiPu_0017915	A0A401S0D6	A0A401RJS2	Uncharacterized protein.	Uncharacterized protein.	0.703
chiPu_0005842	chiPu_0013348	A0A401SAJ2	A0A401SWW3	Uncharacterized protein.	Uncharacterized protein.	0.545
chiPu_0005842	chiPu_0017915	A0A401SAJ2	A0A401RJS2	Uncharacterized protein.	Uncharacterized protein.	0.703
chiPu_0006947	chiPu_0017915	A0A401SDM6	A0A401RJS2	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.721
chiPu_0007234	chiPu_0001287	A0A401SEP7	A0A401RXM0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.670
chiPu_0007234	chiPu_0017915	A0A401SEP7	A0A401RJS2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.682
chiPu_0007234	chiPu_0026478	A0A401SEP7	A0A401TJ44	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	V-SNARE coiled-coil homology domain-containing protein.	0.637
chiPu_0008757	chiPu_0017915	A0A401SIR3	A0A401RJS2	PRA1 family protein.	Uncharacterized protein.	0.720
chiPu_0008757	chiPu_0023029	A0A401SIR3	A0A401T9D3	PRA1 family protein.	PRA1 family protein.	0.813
chiPu_0013348	chiPu_0001287	A0A401SWW3	A0A401RXM0	Uncharacterized protein.	Uncharacterized protein.	0.705
chiPu_0013348	chiPu_0002188	A0A401SWW3	A0A401S0D6	Uncharacterized protein.	Uncharacterized protein.	0.451
chiPu_0013348	chiPu_0005842	A0A401SWW3	A0A401SAJ2	Uncharacterized protein.	Uncharacterized protein.	0.545
chiPu_0013348	chiPu_0017915	A0A401SWW3	A0A401RJS2	Uncharacterized protein.	Uncharacterized protein.	0.686
chiPu_0017915	chiPu_0000098	A0A401RJS2	A0A401RNC9	Uncharacterized protein.	CS domain-containing protein.	0.752