chiPu_0018125 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0018125

Uncharacterized protein; Belongs to the cytochrome P450 family. (434 aa)

Predicted Functional Partners:

chiPu_0003122

0.897

chiPu_0010159

0.839

chiPu_0012331

0.828

chiPu_0009903

0.807

chiPu_0031642

0.807

chiPu_0007897

0.798

chiPu_0009423

0.773

chiPu_0029996

0.773

chiPu_0014658

0.758

chiPu_0014657

0.758

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0003122	chiPu_0007897	A0A401S2V4	A0A401SGH3	AMP-binding domain-containing protein.	Uncharacterized protein.	0.575
chiPu_0003122	chiPu_0009903	A0A401S2V4	A0A401SM14	AMP-binding domain-containing protein.	Uncharacterized protein.	0.532
chiPu_0003122	chiPu_0012331	A0A401S2V4	A0A401STY4	AMP-binding domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.553
chiPu_0003122	chiPu_0014657	A0A401S2V4	A0A401T0L1	AMP-binding domain-containing protein.	PALB2_WD40 domain-containing protein.	0.997
chiPu_0003122	chiPu_0014658	A0A401S2V4	A0A401T0I7	AMP-binding domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.997
chiPu_0003122	chiPu_0018125	A0A401S2V4	A0A401RL69	AMP-binding domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.897
chiPu_0003122	chiPu_0029996	A0A401S2V4	A0A401TTW0	AMP-binding domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.817
chiPu_0003122	chiPu_0031642	A0A401S2V4	A0A401TYD6	AMP-binding domain-containing protein.	Uncharacterized protein.	0.532
chiPu_0007897	chiPu_0003122	A0A401SGH3	A0A401S2V4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.575
chiPu_0007897	chiPu_0012331	A0A401SGH3	A0A401STY4	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.958
chiPu_0007897	chiPu_0014657	A0A401SGH3	A0A401T0L1	Uncharacterized protein.	PALB2_WD40 domain-containing protein.	0.548
chiPu_0007897	chiPu_0014658	A0A401SGH3	A0A401T0I7	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.548
chiPu_0007897	chiPu_0018125	A0A401SGH3	A0A401RL69	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.798
chiPu_0007897	chiPu_0029996	A0A401SGH3	A0A401TTW0	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.846
chiPu_0009423	chiPu_0018125	A0A401SKQ6	A0A401RL69	Phospholipase A2.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.773
chiPu_0009903	chiPu_0003122	A0A401SM14	A0A401S2V4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.532
chiPu_0009903	chiPu_0012331	A0A401SM14	A0A401STY4	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.575
chiPu_0009903	chiPu_0018125	A0A401SM14	A0A401RL69	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.807
chiPu_0009903	chiPu_0031642	A0A401SM14	A0A401TYD6	Uncharacterized protein.	Uncharacterized protein.	0.912
chiPu_0010159	chiPu_0014657	A0A401SMV0	A0A401T0L1	Nibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis.	PALB2_WD40 domain-containing protein.	0.755