chiPu_0021237 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0021237

Uncharacterized protein. (339 aa)

Predicted Functional Partners:

chiPu_0002976

0.986

chiPu_0003154

0.986

chiPu_0020975

0.981

chiPu_0018874

0.973

chiPu_0012128

0.973

chiPu_0001787

0.971

chiPu_0010901

0.958

chiPu_0009653

0.957

chiPu_0025667

0.957

chiPu_0009816

0.956

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001787	chiPu_0002976	A0A401RZ11	A0A401S2F5	Uncharacterized protein.	Uncharacterized protein.	0.984
chiPu_0001787	chiPu_0003154	A0A401RZ11	A0A401S2Z9	Uncharacterized protein.	Uncharacterized protein.	0.984
chiPu_0001787	chiPu_0009653	A0A401RZ11	A0A401SLD1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.987
chiPu_0001787	chiPu_0009816	A0A401RZ11	A0A401SLU9	Uncharacterized protein.	Uncharacterized protein.	0.703
chiPu_0001787	chiPu_0010901	A0A401RZ11	A0A401SPX8	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.909
chiPu_0001787	chiPu_0012128	A0A401RZ11	A0A401STF6	Uncharacterized protein.	Uncharacterized protein.	0.965
chiPu_0001787	chiPu_0018874	A0A401RZ11	A0A401RQ70	Uncharacterized protein.	Uncharacterized protein.	0.965
chiPu_0001787	chiPu_0020975	A0A401RZ11	A0A401RM09	Uncharacterized protein.	Uncharacterized protein.	0.713
chiPu_0001787	chiPu_0021237	A0A401RZ11	A0A401RPF4	Uncharacterized protein.	Uncharacterized protein.	0.971
chiPu_0001787	chiPu_0025667	A0A401RZ11	A0A401TGG8	Uncharacterized protein.	Uncharacterized protein.	0.987
chiPu_0002976	chiPu_0001787	A0A401S2F5	A0A401RZ11	Uncharacterized protein.	Uncharacterized protein.	0.984
chiPu_0002976	chiPu_0003154	A0A401S2F5	A0A401S2Z9	Uncharacterized protein.	Uncharacterized protein.	0.911
chiPu_0002976	chiPu_0009653	A0A401S2F5	A0A401SLD1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.987
chiPu_0002976	chiPu_0009816	A0A401S2F5	A0A401SLU9	Uncharacterized protein.	Uncharacterized protein.	0.476
chiPu_0002976	chiPu_0010901	A0A401S2F5	A0A401SPX8	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.980
chiPu_0002976	chiPu_0012128	A0A401S2F5	A0A401STF6	Uncharacterized protein.	Uncharacterized protein.	0.774
chiPu_0002976	chiPu_0018874	A0A401S2F5	A0A401RQ70	Uncharacterized protein.	Uncharacterized protein.	0.774
chiPu_0002976	chiPu_0020975	A0A401S2F5	A0A401RM09	Uncharacterized protein.	Uncharacterized protein.	0.998
chiPu_0002976	chiPu_0021237	A0A401S2F5	A0A401RPF4	Uncharacterized protein.	Uncharacterized protein.	0.986
chiPu_0002976	chiPu_0025667	A0A401S2F5	A0A401TGG8	Uncharacterized protein.	Uncharacterized protein.	0.987