STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0000543Collagen IV NC1 domain-containing protein. (1541 aa)    
Predicted Functional Partners:
chiPu_0007577
Integrin beta; Belongs to the integrin beta chain family.
    
  0.826
chiPu_0015908
C1q domain-containing protein.
  
 
 
0.627
chiPu_0028416
NACHT domain-containing protein.
    
  0.606
chiPu_0030127
TROVE domain-containing protein.
    
  0.606
chiPu_0032854
WD_REPEATS_REGION domain-containing protein.
    
  0.604
chiPu_0000377
Integrin beta; Belongs to the integrin beta chain family.
    
 0.600
chiPu_0016960
Integrin beta; Belongs to the integrin beta chain family.
    
 0.600
chiPu_0020116
Integrin beta.
    
 0.595
chiPu_0000416
Integrin beta; Belongs to the integrin beta chain family.
    
 0.595
chiPu_0005117
Integrin beta; Belongs to the integrin beta chain family.
    
 0.568
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.