chiPu_0000764 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0000764

Uncharacterized protein. (272 aa)

Predicted Functional Partners:

chiPu_0001287

0.823

chiPu_0009101

0.817

chiPu_0002736

0.794

chiPu_0006356

0.778

chiPu_0012063

0.672

chiPu_0016943

0.672

chiPu_0009914

0.644

chiPu_0002070

0.643

chiPu_0008339

0.639

chiPu_0016574

0.638

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0000764	chiPu_0001287	A0A401RW50	A0A401RXM0	Uncharacterized protein.	Uncharacterized protein.	0.823
chiPu_0000764	chiPu_0002070	A0A401RW50	A0A401RZU9	Uncharacterized protein.	Uncharacterized protein.	0.643
chiPu_0000764	chiPu_0002736	A0A401RW50	A0A401S1T1	Uncharacterized protein.	Uncharacterized protein.	0.794
chiPu_0000764	chiPu_0006356	A0A401RW50	A0A401SC47	Uncharacterized protein.	Uncharacterized protein.	0.778
chiPu_0000764	chiPu_0008339	A0A401RW50	A0A401SHK0	Uncharacterized protein.	Uncharacterized protein.	0.639
chiPu_0000764	chiPu_0009101	A0A401RW50	A0A401SJR7	Uncharacterized protein.	Uncharacterized protein.	0.817
chiPu_0000764	chiPu_0009914	A0A401RW50	A0A401SM59	Uncharacterized protein.	Uncharacterized protein.	0.644
chiPu_0000764	chiPu_0012063	A0A401RW50	A0A401ST99	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.672
chiPu_0000764	chiPu_0016574	A0A401RW50	A0A401T5W4	Uncharacterized protein.	Uncharacterized protein.	0.638
chiPu_0000764	chiPu_0016943	A0A401RW50	A0A401T709	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.672
chiPu_0001287	chiPu_0000764	A0A401RXM0	A0A401RW50	Uncharacterized protein.	Uncharacterized protein.	0.823
chiPu_0001287	chiPu_0002070	A0A401RXM0	A0A401RZU9	Uncharacterized protein.	Uncharacterized protein.	0.642
chiPu_0001287	chiPu_0008339	A0A401RXM0	A0A401SHK0	Uncharacterized protein.	Uncharacterized protein.	0.991
chiPu_0001287	chiPu_0009101	A0A401RXM0	A0A401SJR7	Uncharacterized protein.	Uncharacterized protein.	0.528
chiPu_0002070	chiPu_0000764	A0A401RZU9	A0A401RW50	Uncharacterized protein.	Uncharacterized protein.	0.643
chiPu_0002070	chiPu_0001287	A0A401RZU9	A0A401RXM0	Uncharacterized protein.	Uncharacterized protein.	0.642
chiPu_0002070	chiPu_0002736	A0A401RZU9	A0A401S1T1	Uncharacterized protein.	Uncharacterized protein.	0.979
chiPu_0002070	chiPu_0006356	A0A401RZU9	A0A401SC47	Uncharacterized protein.	Uncharacterized protein.	0.544
chiPu_0002070	chiPu_0008339	A0A401RZU9	A0A401SHK0	Uncharacterized protein.	Uncharacterized protein.	0.426
chiPu_0002070	chiPu_0009101	A0A401RZU9	A0A401SJR7	Uncharacterized protein.	Uncharacterized protein.	0.519