chiPu_0001018 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0001018

Uncharacterized protein. (477 aa)

Predicted Functional Partners:

chiPu_0006487

0.542

chiPu_0009125

0.487

chiPu_0013244

0.481

chiPu_0010232

0.476

chiPu_0000498

0.424

chiPu_0014932

0.424

chiPu_0011722

0.423

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0000498	chiPu_0001018	A0A401RVG5	A0A401RWU5	BTB domain-containing protein.	Uncharacterized protein.	0.424
chiPu_0001018	chiPu_0000498	A0A401RWU5	A0A401RVG5	Uncharacterized protein.	BTB domain-containing protein.	0.424
chiPu_0001018	chiPu_0006487	A0A401RWU5	A0A401SCF0	Uncharacterized protein.	Uncharacterized protein.	0.542
chiPu_0001018	chiPu_0009125	A0A401RWU5	A0A401SJV7	Uncharacterized protein.	Uncharacterized protein.	0.487
chiPu_0001018	chiPu_0010232	A0A401RWU5	A0A401SN37	Uncharacterized protein.	Rhodopsin.	0.476
chiPu_0001018	chiPu_0011722	A0A401RWU5	A0A401SS72	Uncharacterized protein.	BTB domain-containing protein.	0.423
chiPu_0001018	chiPu_0013244	A0A401RWU5	A0A401SWK7	Uncharacterized protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.481
chiPu_0001018	chiPu_0014932	A0A401RWU5	A0A401T1E0	Uncharacterized protein.	BTB domain-containing protein.	0.424
chiPu_0006487	chiPu_0001018	A0A401SCF0	A0A401RWU5	Uncharacterized protein.	Uncharacterized protein.	0.542
chiPu_0009125	chiPu_0001018	A0A401SJV7	A0A401RWU5	Uncharacterized protein.	Uncharacterized protein.	0.487
chiPu_0009125	chiPu_0013244	A0A401SJV7	A0A401SWK7	Uncharacterized protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.515
chiPu_0010232	chiPu_0001018	A0A401SN37	A0A401RWU5	Rhodopsin.	Uncharacterized protein.	0.476
chiPu_0011722	chiPu_0001018	A0A401SS72	A0A401RWU5	BTB domain-containing protein.	Uncharacterized protein.	0.423
chiPu_0013244	chiPu_0001018	A0A401SWK7	A0A401RWU5	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Uncharacterized protein.	0.481
chiPu_0013244	chiPu_0009125	A0A401SWK7	A0A401SJV7	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Uncharacterized protein.	0.515
chiPu_0014932	chiPu_0001018	A0A401T1E0	A0A401RWU5	BTB domain-containing protein.	Uncharacterized protein.	0.424