chiPu_0001238 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0001238

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (341 aa)

Predicted Functional Partners:

chiPu_0008120

0.949

chiPu_0003244

0.947

chiPu_0015217

0.947

chiPu_0004525

0.935

chiPu_0004301

0.933

chiPu_0014637

0.929

chiPu_0011332

0.925

chiPu_0012053

0.913

chiPu_0021204

0.894

chiPu_0021203

0.894

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0001238	chiPu_0003244	A0A401RXM7	A0A401S399	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.947
chiPu_0001238	chiPu_0004301	A0A401RXM7	A0A401S673	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	ATG11 domain-containing protein.	0.933
chiPu_0001238	chiPu_0004525	A0A401RXM7	A0A401S6U4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.935
chiPu_0001238	chiPu_0008120	A0A401RXM7	A0A401SH05	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.949
chiPu_0001238	chiPu_0011332	A0A401RXM7	A0A401SR53	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.925
chiPu_0001238	chiPu_0012053	A0A401RXM7	A0A401ST88	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.913
chiPu_0001238	chiPu_0014637	A0A401RXM7	A0A401T0J0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.929
chiPu_0001238	chiPu_0015217	A0A401RXM7	A0A401T234	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.947
chiPu_0001238	chiPu_0021203	A0A401RXM7	A0A401RP96	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.894
chiPu_0001238	chiPu_0021204	A0A401RXM7	A0A401RP33	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.894
chiPu_0003244	chiPu_0001238	A0A401S399	A0A401RXM7	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.947
chiPu_0003244	chiPu_0004301	A0A401S399	A0A401S673	Uncharacterized protein.	ATG11 domain-containing protein.	0.910
chiPu_0003244	chiPu_0004525	A0A401S399	A0A401S6U4	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.910
chiPu_0003244	chiPu_0008120	A0A401S399	A0A401SH05	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0003244	chiPu_0011332	A0A401S399	A0A401SR53	Uncharacterized protein.	Uncharacterized protein.	0.999
chiPu_0003244	chiPu_0012053	A0A401S399	A0A401ST88	Uncharacterized protein.	Uncharacterized protein.	0.996
chiPu_0003244	chiPu_0014637	A0A401S399	A0A401T0J0	Uncharacterized protein.	Uncharacterized protein.	0.910
chiPu_0003244	chiPu_0015217	A0A401S399	A0A401T234	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.999
chiPu_0003244	chiPu_0021203	A0A401S399	A0A401RP96	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.784
chiPu_0003244	chiPu_0021204	A0A401S399	A0A401RP33	Uncharacterized protein.	Uncharacterized protein.	0.784