STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0002623Uncharacterized protein. (468 aa)    
Predicted Functional Partners:
chiPu_0000194
Uncharacterized protein.
    
 
 0.952
chiPu_0008195
Uncharacterized protein.
    
 
 0.822
chiPu_0008197
Uncharacterized protein.
    
 
 0.822
chiPu_0017088
Uncharacterized protein.
    
 
 0.822
chiPu_0001644
Uncharacterized protein.
    
 
 0.821
chiPu_0012397
Uncharacterized protein.
    
 
 0.821
chiPu_0004163
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.680
chiPu_0012922
FERM domain-containing protein.
    
 
 0.618
chiPu_0002439
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.612
chiPu_0003880
Uncharacterized protein.
    
 
 0.606
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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