chiPu_0003118 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0003118

Sec3-PIP2_bind domain-containing protein. (891 aa)

Predicted Functional Partners:

chiPu_0005622

0.996

chiPu_0002077

0.995

chiPu_0017435

0.994

chiPu_0010198

0.994

chiPu_0008522

0.986

chiPu_0012070

0.986

chiPu_0003266

0.983

chiPu_0015487

0.983

chiPu_0000679

0.970

chiPu_0015758

0.955

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0000679	chiPu_0002077	A0A401RVY8	A0A401RZX5	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.982
chiPu_0000679	chiPu_0003118	A0A401RVY8	A0A401S2W8	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec3-PIP2_bind domain-containing protein.	0.970
chiPu_0000679	chiPu_0003266	A0A401RVY8	A0A401S369	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.963
chiPu_0000679	chiPu_0005622	A0A401RVY8	A0A401S9W9	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.982
chiPu_0000679	chiPu_0008522	A0A401RVY8	A0A401SI56	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.964
chiPu_0000679	chiPu_0010198	A0A401RVY8	A0A401SMX7	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	PH domain-containing protein.	0.982
chiPu_0000679	chiPu_0012070	A0A401RVY8	A0A401ST77	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec8_exocyst domain-containing protein.	0.964
chiPu_0000679	chiPu_0015487	A0A401RVY8	A0A401T328	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.963
chiPu_0000679	chiPu_0017435	A0A401RVY8	A0A401RFZ1	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.982
chiPu_0002077	chiPu_0000679	A0A401RZX5	A0A401RVY8	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.982
chiPu_0002077	chiPu_0003118	A0A401RZX5	A0A401S2W8	Uncharacterized protein.	Sec3-PIP2_bind domain-containing protein.	0.995
chiPu_0002077	chiPu_0003266	A0A401RZX5	A0A401S369	Uncharacterized protein.	Uncharacterized protein.	0.991
chiPu_0002077	chiPu_0005622	A0A401RZX5	A0A401S9W9	Uncharacterized protein.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
chiPu_0002077	chiPu_0008522	A0A401RZX5	A0A401SI56	Uncharacterized protein.	Uncharacterized protein.	0.994
chiPu_0002077	chiPu_0010198	A0A401RZX5	A0A401SMX7	Uncharacterized protein.	PH domain-containing protein.	0.999
chiPu_0002077	chiPu_0012070	A0A401RZX5	A0A401ST77	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.994
chiPu_0002077	chiPu_0015487	A0A401RZX5	A0A401T328	Uncharacterized protein.	Uncharacterized protein.	0.991
chiPu_0002077	chiPu_0015758	A0A401RZX5	A0A401T3L2	Uncharacterized protein.	Uncharacterized protein.	0.973
chiPu_0002077	chiPu_0017435	A0A401RZX5	A0A401RFZ1	Uncharacterized protein.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.999
chiPu_0003118	chiPu_0000679	A0A401S2W8	A0A401RVY8	Sec3-PIP2_bind domain-containing protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.970