STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiPu_0003957SURF6 domain-containing protein. (345 aa)    
Predicted Functional Partners:
chiPu_0003904
Uncharacterized protein.
   
 
 0.982
chiPu_0018953
Brix domain-containing protein.
   
 
 0.978
chiPu_0001457
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.978
chiPu_0005492
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.978
chiPu_0009827
RRM domain-containing protein.
   
 
 0.978
chiPu_0017550
Uncharacterized protein.
   
 
 0.977
chiPu_0022168
Brix domain-containing protein.
   
 
 0.975
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.970
chiPu_0001861
Uncharacterized protein.
   
 
 0.970
chiPu_0020239
Brix domain-containing protein.
   
 
 0.965
Your Current Organism:
Chiloscyllium punctatum
NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark
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