chiPu_0004068 protein (Chiloscyllium punctatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chiPu_0004068

Protein kinase domain-containing protein. (1217 aa)

Predicted Functional Partners:

chiPu_0009677

0.728

chiPu_0007566

0.722

chiPu_0005542

0.574

chiPu_0005124

0.543

chiPu_0014654

0.543

chiPu_0011492

0.539

chiPu_0022932

0.525

chiPu_0002976

0.516

chiPu_0003154

0.516

chiPu_0013848

0.503

Your Current Organism:

Chiloscyllium punctatum

NCBI taxonomy Id: 137246
Other names: C. punctatum, brownbanded bambooshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chiPu_0002976	chiPu_0003154	A0A401S2F5	A0A401S2Z9	Uncharacterized protein.	Uncharacterized protein.	0.911
chiPu_0002976	chiPu_0004068	A0A401S2F5	A0A401S5J7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.516
chiPu_0002976	chiPu_0005124	A0A401S2F5	A0A401S8K8	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.983
chiPu_0002976	chiPu_0005542	A0A401S2F5	A0A401S9U1	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.982
chiPu_0002976	chiPu_0007566	A0A401S2F5	A0A401SFF0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
chiPu_0002976	chiPu_0009677	A0A401S2F5	A0A401SLF1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
chiPu_0002976	chiPu_0011492	A0A401S2F5	A0A401SRM0	Uncharacterized protein.	Uncharacterized protein.	0.980
chiPu_0002976	chiPu_0013848	A0A401S2F5	A0A401SY95	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.621
chiPu_0002976	chiPu_0014654	A0A401S2F5	A0A401T0H5	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.980
chiPu_0003154	chiPu_0002976	A0A401S2Z9	A0A401S2F5	Uncharacterized protein.	Uncharacterized protein.	0.911
chiPu_0003154	chiPu_0004068	A0A401S2Z9	A0A401S5J7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.516
chiPu_0003154	chiPu_0005124	A0A401S2Z9	A0A401S8K8	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.980
chiPu_0003154	chiPu_0005542	A0A401S2Z9	A0A401S9U1	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.980
chiPu_0003154	chiPu_0007566	A0A401S2Z9	A0A401SFF0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
chiPu_0003154	chiPu_0009677	A0A401S2Z9	A0A401SLF1	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.532
chiPu_0003154	chiPu_0011492	A0A401S2Z9	A0A401SRM0	Uncharacterized protein.	Uncharacterized protein.	0.980
chiPu_0003154	chiPu_0013848	A0A401S2Z9	A0A401SY95	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.616
chiPu_0003154	chiPu_0014654	A0A401S2Z9	A0A401T0H5	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.980
chiPu_0004068	chiPu_0002976	A0A401S5J7	A0A401S2F5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.516
chiPu_0004068	chiPu_0003154	A0A401S5J7	A0A401S2Z9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.516